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Custom genotyping plugin: predicting phenotypic traits from whole genome sequences

In this tutorial we will use the Custom genotyping plugin to screen whole genome sequences of Salmonella for acquired and mutational resistance.

PDF file: 
PDF icon Custom_genotyping.pdf
Download sample data: 
Custom knowledgebases

Knowledge bases for use with the Custom genotyping plugin.

Download demonstration database: 
WGS_demo_database_for_Salmonella_enterica

Demonstration database containing data for a set of 62 Salmonella enterica isolates. This database uses publicly available next-generation sequence reads from the Sequence Read Archive (SRA). For each isolate, NGS reads were de novo assembled into genome sequences. wgMLST alleles were called using the assembly-based and assembly-free method.

Note that the downloaded database backup file (.bnbk) can be restored via the Restore database... functionality in the BIONUMERICS startup screen.