This tutorial demonstrates a RAxML(1) and FastTree(2) analysis on a multiple alignment in a BIONUMERICS database.
(1): Alexandros Stamatakis. Raxml version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30(9):1312–1313, 2014. (2): Morgan N Price, Paramvir S Dehal, and Adam P Arkin. Fasttree 2–approximately maximumlikelihood trees for large alignments. PloS one, 5(3), 2010.
Demonstration database containing data for a set of 38 Burkholderia cepacia complex isolates. This database uses publicly available genome assemblies imported from NCBI. wgMLST alleles were called using the assembly-based method.
Note that the downloaded database backup file (.bnbk) can be restored via the Restore database... functionality in the BIONUMERICS startup screen.