Performing whole genome SNP analysis with mapping performed locally

In this tutorial all steps needed to perform a wgSNP analysis with a local mapping of the reads against the reference sequence are illustrated.

wgSNP analysis

Whole-genome Single Nucleotide Polymorphism (SNP) analysis using BIONUMERICS. See the wgSNP application page for a complete overview.
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FASTQ files
This data set contains 10 gzipped fastq files of 5 paired end read data file pairs coming from Staphylococcus aureus and an Excel file containing some metadata on the sequence read sets. This data was generated by Illumina MiSeq whole genome sequencing and downloaded from NCBI.